Class ecapsulating volumetric density data. More...

#include <mdsDensityVolume.h>

Inheritance diagram for mds::img::CDensityVolume:

[legend]

Public Types
enum	{ DEFAULT_MARGIN = 3 }
	Default size of the volume margin. More...
enum	{ CLASS_VOLUME }
	Templates that require members of the CVolume class can use this enum to check the existence. More...
enum	{ CLASS_SERIALIZABLE }
	Templates that require members of the CSerializable class may use this enum to check the existence. More...
enum	{ VERSION = 0x33 }
	Current serialization interface version. More...
enum	{ MAX_NAME_LENGTH = 32 }
	Maximal length of a data entity name in characters. More...
enum	{ CLASS_OBJECT }
	Templates that require members of the CObject class can use this enum to check the existence. More...
enum	{ HEAP_OBJECT = 0x70616568 }
	Signature used to recognize objects on the heap. More...
typedef CDVolume	tBase
	Base type.
typedef Allocator< T >	tDataStorage
	Volume data storage type.
typedef CRectBox< CVolume >	tRect
	View of the volume (i.e. rectangular box).
typedef CVolumeRow< CVolume >	tRow
	Volume row (the x coordinate is varying while y and z coordinates are fixed).
typedef CVolume< T, Allocator >	tVolume
	Volume type.
typedef T	tVoxel
	Voxel type.
Public Member Functions
CVolume &	abs ()
	Absolute value of all voxels.
T &	at (tSize x, tSize y, tSize z)
	Returns the subscripted voxel [x][y][z].
const T &	at (tSize x, tSize y, tSize z) const
T &	at (tSize i)
	Returns the subscripted voxel.
const T &	at (tSize i) const
	CDensityVolume ()
	Default constructor.
	CDensityVolume (tSize XSize, tSize YSize, tSize ZSize, tSize Margin=DEFAULT_MARGIN)
	Constructor.
	CDensityVolume (const CDensityVolume &Volume)
	Copy constructor.
	CDensityVolume (const CDensityVolume &Volume, EMakeRef)
	Copy constructor.
	CDensityVolume (const tBase &Volume)
	Copy constructor.
	CDensityVolume (const tBase &Volume, EMakeRef)
	Copy constructor.
bool	checkPosition (tSize x, tSize y, tSize z) const
	Checks the voxel position.
T	color2Voxel (CColor Color) const
	Converts a specified color to the volume voxel format and range.
template<class Derived >
CVolume &	convert (const CVolumeBase< Derived > &Volume)
	Conversion between volumes of different types.
template<typename Derived >
CVolume< T, A > &	convert (const CVolumeBase< Derived > &Volume)
CDensityVolume &	create (tSize XSize, tSize YSize, tSize ZSize, tSize Margin=DEFAULT_MARGIN)
	Creates a new volume.
CDensityVolume &	create (const tBase &Volume)
	Creates a new volume.
CDensityVolume &	create (const tBase &Volume, EMakeRef)
	Creates a new volume.
CDensityVolume &	create (const CDensityVolume &Volume)
	Creates a new volume.
CDensityVolume &	create (const CDensityVolume &Volume, EMakeRef)
	Creates a new volume.
CVolume &	create (const CSize3i &Size, tSize Margin=0)
	Resizes the volume data.
CVolume &	create (const CVolume &Volume, tSize x, tSize y, tSize z, tSize XSize, tSize YSize, tSize ZSize)
	Creates a subvolume of a given volume.
CVolume &	create (const CVolume &Volume, tSize x, tSize y, tSize z, tSize XSize, tSize YSize, tSize ZSize, EMakeRef)
	Creates a subvolume of a given volume.
CVolume &	create (const tRect &Volume)
	Creates copy of a given subvolume.
CVolume &	create (const tRect &Volume, EMakeRef)
	Creates reference to a given subvolume.
CVolume &	create (const CVolume &Volume)
	Creates copy of a volume.
CVolume &	create (const CVolume &Volume, EMakeRef)
	Creates reference to a given volume.
CVolume &	cut (const T &Lower, const T &Upper)
	Cuts range of voxel values.
tSize	depth () const
template<class S >
void	deserialize (mds::mod::CChannelSerializer< S > &Reader)
	Deserializes all class members.
template<class S >
void	deserialize (mds::mod::CChannelSerializer< S > &Reader)
	Deserializes all class members.
CVolume &	fill (const T &c)
	Fills the volume using a given voxel value.
CVolume &	fillEntire (const T &c)
	Fills the entire volume including its margin using a given voxel value.
CVolume &	fillMargin (const T &c)
	Pads the volume margin with constant value.
template<class Function >
Function	forEach (Function Func)
	Calls a function object for every voxel.
template<class Function >
Function	forEach (Function Func) const
	Calls a function object for every voxel.
template<class Function >
Function	forEach (Function Func)
	Calls a function object for every voxel.
template<class Function >
Function	forEach (Function Func) const
	Calls a function object for every voxel.
double	getDX () const
	Returns the real voxel size in x-axis.
double	getDY () const
	Returns the real voxel size in y-axis.
double	getDZ () const
	Returns the real voxel size in z-axis.
tSize	getIdx (tSize x, tSize y, tSize z) const
	Calculates index of a voxel.
tVolume &	getImpl ()
	Returns reference to the volume data implementation.
const tVolume &	getImpl () const
tSize	getMargin () const
	Returns the volume Margin size in voxels.
bool	getPlaneXY (tSize z, CImage< T > &Plane)
	Cuts the volume using plane XY and saves obtained data to a given image.
bool	getPlaneXZ (tSize y, CImage< T > &Plane)
	Cuts the volume using plane XZ and saves obtained data to a given image.
bool	getPlaneYZ (tSize x, CImage< T > &Plane)
	Cuts the volume using plane YZ and saves obtained data to a given image.
T *	getPtr ()
	Returns pointer to the volume data.
const T *	getPtr () const
T *	getPtr (tSize x, tSize y, tSize z)
	Returns pointer to the given voxel.
const T *	getPtr (tSize x, tSize y, tSize z) const
int	getReferencesCount () const
	Returns the number of references.
T *	getRowPtr (tSize y, tSize z)
	Returns pointer to the first element of the volume row.
const T *	getRowPtr (tSize y, tSize z) const
CSize3i &	getSize ()
	Returns the volume size.
const CSize3i &	getSize () const
bool	getSlice (double dPosition, CSlice &Plane)
	Cuts the volume using plane by given slice and saves obtained data to the slice.
bool	getSliceXY (tSize z, CSlice &Plane)
	Cuts the volume using plane XY and saves obtained data to a given slice.
bool	getSliceXY (double dZ, CSlice &Plane)
	Cuts the volume using plane XY and saves obtained data to a given slice.
bool	getSliceXZ (tSize y, CSlice &Plane)
	Cuts the volume using plane XZ and saves obtained data to a given slice.
bool	getSliceXZ (double dY, CSlice &Plane)
	Cuts the volume using plane XZ and saves obtained data to a given slice.
bool	getSliceYZ (tSize x, CSlice &Plane)
	Cuts the volume using plane YZ and saves obtained data to a given slice.
bool	getSliceYZ (double dX, CSlice &Plane)
	Cuts the volume using plane YZ and saves obtained data to a given slice.
tSize	getXOffset () const
	Returns offset between two neigbouring voxels in x-axis.
tSize	getXSize () const
	Returns the volume size (dimensions).
tSize	getYOffset () const
	Returns offset between two neigbouring voxels in y-axis.
tSize	getYSize () const
tSize	getZOffset () const
	Returns offset between two neigbouring voxels in z-axis.
tSize	getZSize () const
tSize	height () const
void	initSlice (CSlice &Slice, EPlane eOrientation)
	Initializes slice parameters (size and etc.) with respect to the volume parameters in a given direction.
T	interpolate (const CPoint3D &Point) const
	Bilinear subvoxel value interpolation.
bool	isOnHeap () const
	Returns true if the object is allocated on the heap.
CVolume &	limit (const T &Lower, const T &Upper)
	Limits the range of voxel values.
	MDS_ENTITY_COMPRESSION (mds::mod::CC_RAW)
	Standard method getEntityCompression().
	MDS_ENTITY_NAME ("DensityVolume")
	Standard method getEntityName().
	MDS_SHAREDPTR (CDensityVolume)
	Smart pointer type.
	MDS_SHAREDPTR (CVolume)
	Declare smart pointer type tSmartPtr.
CVolume &	mirrorMargin ()
	Pads the volume margin using a simple mirroring.
T &	operator() (tSize x, tSize y, tSize z)
	Returns the subscripted voxel [x][y][z].
const T &	operator() (tSize x, tSize y, tSize z) const
T &	operator() (tSize i)
	Returns the subscripted voxel.
const T &	operator() (tSize i) const
template<class Derived >
CVolume &	operator*= (const CVolumeBase< Derived > &Volume)
	Pixel wise product.
template<typename U >
CVolume &	operator*= (const CScalar< U > &c)
	Multiplies all pixels by scalar.
template<class Derived >
CVolume< T, A > &	operator*= (const CVolumeBase< Derived > &Volume)
template<typename U >
CVolume< T, A > &	operator*= (const CScalar< U > &c)
template<class Derived >
CVolume &	operator+= (const CVolumeBase< Derived > &Volume)
	Pixel wise addition.
template<typename U >
CVolume &	operator+= (const CScalar< U > &c)
	Adds scalar to all pixels.
template<class Derived >
CVolume< T, A > &	operator+= (const CVolumeBase< Derived > &Volume)
template<typename U >
CVolume< T, A > &	operator+= (const CScalar< U > &c)
template<class Derived >
CVolume &	operator-= (const CVolumeBase< Derived > &Volume)
	Pixel wise subtraction.
template<typename U >
CVolume &	operator-= (const CScalar< U > &c)
	Subtracts scalar from all pixels.
template<class Derived >
CVolume< T, A > &	operator-= (const CVolumeBase< Derived > &Volume)
template<typename U >
CVolume< T, A > &	operator-= (const CScalar< U > &c)
template<class Derived >
CVolume &	operator/= (const CVolumeBase< Derived > &Volume)
	Pixel wise division.
template<typename U >
CVolume &	operator/= (const CScalar< U > &c)
	Divides all pixels by scalar.
template<class Derived >
CVolume< T, A > &	operator/= (const CVolumeBase< Derived > &Volume)
template<typename U >
CVolume< T, A > &	operator/= (const CScalar< U > &c)
CDensityVolume &	operator= (const CDensityVolume &Volume)
	Volume assignment operator.
template<class Function >
Function	pforEach (Function Func)
	Calls a function object for every voxel.
template<class Function >
Function	pforEach (Function Func) const
	Calls a function object for every voxel.
template<class Function >
Function	pforEach (Function Func)
	Calls a function object for every voxel.
template<class Function >
Function	pforEach (Function Func) const
	Calls a function object for every voxel.
tRect	rect (const CPoint3i &Position, const CSize3i &Size)
	Returns a specified sub-volume (i.e. rectangular box).
const tRect	rect (const CPoint3i &Position, const CSize3i &Size) const
tRect	rect (const CRange &XRange, const CRange &YRange, const CRange &ZRange)
	Returns a specified sub-volume (i.e. rectangular box).
const tRect	rect (const CRange &XRange, const CRange &YRange, const CRange &ZRange) const
CVolume &	replace (const T &Value, const T &NewValue)
	Replaces all voxels of a given value by a specified value.
tRow	row (tSize y, tSize z)
	Returns a specified row.
const tRow	row (tSize y, tSize z) const
template<class S >
void	serialize (mds::mod::CChannelSerializer< S > &Writer)
	Serializes all class members.
template<class S >
void	serialize (mds::mod::CChannelSerializer< S > &Writer)
	Serializes all class members.
tVolume &	set (tSize x, tSize y, tSize z, const tVoxel &Value)
	Sets the voxel at the position [x][y][z].
tVolume &	set (tSize i, const tVoxel &Value)
	Sets the subscripted voxel.
CVolume &	set (tSize x, tSize y, tSize z, const T &Value)
	Sets the voxel at the position [x][y][z].
CVolume &	set (tSize i, const T &Value)
	Sets the subscripted voxel.
CDensityVolume &	setDX (double dValue)
	Set the real voxel size in x-axis.
CDensityVolume &	setDY (double dValue)
	Set the real voxel size in y-axis.
CDensityVolume &	setDZ (double dValue)
	Set the real voxel size in z-axis.
bool	setPlaneXY (tSize z, const CImage< T > &Plane)
	Projects a given image data to the volume using a specified plane.
bool	setPlaneXZ (tSize y, const CImage< T > &Plane)
	Projects a given image data to the volume using a specified plane.
bool	setPlaneYZ (tSize x, const CImage< T > &Plane)
	Projects a given image data to the volume using a specified plane.
CDensityVolume &	setVoxel (double dDX, double dDY, double dDZ)
	Sets voxel dimensions.
CVolume &	subSample (const CVolume &Volume, tSize l=2, tSize m=2, tSize n=2)
	Subsample the volume.
tSize	width () const
	Returns the volume size (dimensions).
virtual	~CDensityVolume ()
	Destructor.
Static Public Member Functions
static int	getBlockSize ()
	Default block size.
static int	getCompression ()
	Default compression method.
static const char *	getName ()
	Default class name.
static void *	operator new (std::size_t Size)
	Allocates a new object on the heap.
Protected Member Functions
void	addReference () const
	Increase the reference counter.
bool	delReference () const
	Decrease the reference counter.
Protected Attributes
tDataStorage	m_DataStorage
	Volume data storage.
double	m_dDX
	Real voxel size.
double	m_dDY
double	m_dDZ
int	m_iHeapObject
	Flag initialized if the object is on the heap.
int	m_iReferences
	The number of references to the object.
tSize	m_Margin
	Volume margin size.
CSize3i	m_Size
	Volume dimensions.
tSize	m_YOffset
	Offsets used by subscripting functions.
tSize	m_ZeroOffset
	Offset of the first voxel (0,0,0) from the beginning of data.
tSize	m_ZOffset

Detailed Description

Class ecapsulating volumetric density data.

Member Typedef Documentation

typedef CDVolume mds::img::CDensityVolume::tBase

Base type.

Reimplemented from mds::img::CVolume< T, Allocator >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

typedef Allocator<T> mds::img::CVolume< T, Allocator >::tDataStorage [inherited]

Volume data storage type.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

typedef CRectBox<CVolume> mds::img::CVolume< T, Allocator >::tRect [inherited]

View of the volume (i.e. rectangular box).

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

typedef CVolumeRow<CVolume> mds::img::CVolume< T, Allocator >::tRow [inherited]

Volume row (the x coordinate is varying while y and z coordinates are fixed).

typedef CVolume< T, Allocator > mds::img::CVolumeBase< CVolume< T, Allocator > >::tVolume [inherited]

Volume type.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

typedef T mds::img::CVolume< T, Allocator >::tVoxel [inherited]

Voxel type.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

Member Enumeration Documentation

anonymous enum

Default size of the volume margin.

Enumerator:

DEFAULT_MARGIN

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

anonymous enum [inherited]

Templates that require members of the CVolume class can use this enum to check the existence.

Enumerator:

CLASS_VOLUME

anonymous enum [inherited]

Templates that require members of the CSerializable class may use this enum to check the existence.

Enumerator:

CLASS_SERIALIZABLE

anonymous enum [inherited]

Current serialization interface version.

Enumerator:

VERSION

anonymous enum [inherited]

Maximal length of a data entity name in characters.

Enumerator:

MAX_NAME_LENGTH

anonymous enum [inherited]

Templates that require members of the CObject class can use this enum to check the existence.

Enumerator:

CLASS_OBJECT

anonymous enum [inherited]

Signature used to recognize objects on the heap.

Enumerator:

HEAP_OBJECT

Constructor & Destructor Documentation

mds::img::CDensityVolume::CDensityVolume ( )

Default constructor.

mds::img::CDensityVolume::CDensityVolume	(	tSize	XSize,
		tSize	YSize,
		tSize	ZSize,
		tSize	Margin = `DEFAULT_MARGIN`
	)

Constructor.

mds::img::CDensityVolume::CDensityVolume ( const CDensityVolume & Volume )

Copy constructor.

Makes a new copy of the volume data.

mds::img::CDensityVolume::CDensityVolume	(	const CDensityVolume &	Volume,
		EMakeRef
	)

Copy constructor.

Makes only a reference to the exisiting data.

mds::img::CDensityVolume::CDensityVolume ( const tBase & Volume )

Copy constructor.

Makes a new copy of the volume data.

mds::img::CDensityVolume::CDensityVolume	(	const tBase &	Volume,
		EMakeRef
	)

Copy constructor.

Makes only a reference to the exisiting data.

mds::img::CDensityVolume::~CDensityVolume ( ) [virtual]

Destructor.

Member Function Documentation

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::abs ( ) [inherited]

Absolute value of all voxels.

void mds::base::CObject::addReference ( ) const [protected, inherited]

Increase the reference counter.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

T& mds::img::CVolume< T, Allocator >::at	(	tSize	x,
		tSize	y,
		tSize	z
	)		`[inherited]`

Returns the subscripted voxel [x][y][z].

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

const T& mds::img::CVolume< T, Allocator >::at	(	tSize	x,
		tSize	y,
		tSize	z
	)		const `[inherited]`

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

T& mds::img::CVolume< T, Allocator >::at ( tSize i ) [inherited]

Returns the subscripted voxel.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

const T& mds::img::CVolume< T, Allocator >::at ( tSize i ) const [inherited]

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class A>

bool CVolume::checkPosition	(	tSize	x,
		tSize	y,
		tSize	z
	)		const `[inherited]`

Checks the voxel position.

Returns true if a specified position is satisfactory.

template<typename T , template< typename > class A>

T CVolume::color2Voxel ( CColor Color ) const [inherited]

Converts a specified color to the volume voxel format and range.

template<typename T , template< typename > class A>

template<typename Derived >

CVolume< T, A > & mds::img::CVolume< T, A >::convert ( const CVolumeBase< Derived > & Volume ) [inherited]

Conversion between volumes of different types.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<typename Derived >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::convert ( const CVolumeBase< Derived > & Volume ) [inherited]

CDensityVolume & mds::img::CDensityVolume::create	(	tSize	XSize,
		tSize	YSize,
		tSize	ZSize,
		tSize	Margin = `DEFAULT_MARGIN`
	)

Creates a new volume.

Reimplemented from mds::img::CVolume< T, Allocator >.

CDensityVolume & mds::img::CDensityVolume::create ( const tBase & Volume )

Creates a new volume.

Makes a new copy of the volume data.

CDensityVolume & mds::img::CDensityVolume::create	(	const tBase &	Volume,
		EMakeRef
	)

Creates a new volume.

Makes only a reference to the exisiting data.

CDensityVolume & mds::img::CDensityVolume::create ( const CDensityVolume & Volume )

Creates a new volume.

Makes a new copy of the volume data.

CDensityVolume & mds::img::CDensityVolume::create	(	const CDensityVolume &	Volume,
		EMakeRef
	)

Creates a new volume.

Makes only a reference to the exisiting data.

template<typename T , template< typename > class A>

CVolume< T, A > & mds::img::CVolume< T, A >::create	(	const CSize3i &	Size,
		tSize	Margin = `0`
	)		`[inherited]`

Resizes the volume data.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CVolume& mds::img::CVolume< T, Allocator >::create	(	const CVolume< T, Allocator > &	Volume,
		tSize	x,
		tSize	y,
		tSize	z,
		tSize	XSize,
		tSize	YSize,
		tSize	ZSize
	)		`[inherited]`

Creates a subvolume of a given volume.

Makes own copy of the data.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CVolume& mds::img::CVolume< T, Allocator >::create	(	const CVolume< T, Allocator > &	Volume,
		tSize	x,
		tSize	y,
		tSize	z,
		tSize	XSize,
		tSize	YSize,
		tSize	ZSize,
		EMakeRef
	)		`[inherited]`

Creates a subvolume of a given volume.

Makes only a reference to the data.

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::create ( const tRect & Volume ) [inherited]

Creates copy of a given subvolume.

Makes own copy of the data.

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::create	(	const tRect &	Volume,
		EMakeRef
	)		`[inherited]`

Creates reference to a given subvolume.

Makes only a reference to the data.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CVolume& mds::img::CVolume< T, Allocator >::create ( const CVolume< T, Allocator > & Volume ) [inherited]

Creates copy of a volume.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CVolume& mds::img::CVolume< T, Allocator >::create	(	const CVolume< T, Allocator > &	Volume,
		EMakeRef
	)		`[inherited]`

Creates reference to a given volume.

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::cut	(	const T &	Lower,
		const T &	Upper
	)		`[inherited]`

Cuts range of voxel values.

bool mds::base::CObject::delReference ( ) const [protected, inherited]

Decrease the reference counter.

Returns true if the decremented number of references is lower or equal to zero and object must be deleted.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::depth ( ) const [inherited]

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<class S >

void mds::img::CDensityVolume::deserialize ( mds::mod::CChannelSerializer< S > & Reader )

Deserializes all class members.

Reimplemented from mds::img::CVolume< T, Allocator >.

template<class S >

void mds::img::CDensityVolume::deserialize ( mds::mod::CChannelSerializer< S > & Reader )

Deserializes all class members.

Reimplemented from mds::img::CVolume< T, Allocator >.

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::fill ( const T & c ) [inherited]

Fills the volume using a given voxel value.

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::fillEntire ( const T & c ) [inherited]

Fills the entire volume including its margin using a given voxel value.

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::fillMargin ( const T & c ) [inherited]

Pads the volume margin with constant value.

template<typename T , template< typename > class A>

template<class Function >

Function mds::img::CVolume< T, A >::forEach ( Function Func ) [inherited]

Calls a function object for every voxel.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class A>

template<class Function >

Function mds::img::CVolume< T, A >::forEach ( Function Func ) const [inherited]

Calls a function object for every voxel.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<class Function >

Function mds::img::CVolume< T, Allocator >::forEach ( Function Func ) [inherited]

Calls a function object for every voxel.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<class Function >

Function mds::img::CVolume< T, Allocator >::forEach ( Function Func ) const [inherited]

Calls a function object for every voxel.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

static int mds::mod::CSerializable::getBlockSize ( ) [static, inherited]

Default block size.

static int mds::mod::CSerializable::getCompression ( ) [static, inherited]

Default compression method.

double mds::img::CDensityVolume::getDX ( ) const

Returns the real voxel size in x-axis.

double mds::img::CDensityVolume::getDY ( ) const

Returns the real voxel size in y-axis.

double mds::img::CDensityVolume::getDZ ( ) const

Returns the real voxel size in z-axis.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::getIdx	(	tSize	x,
		tSize	y,
		tSize	z
	)		const `[inherited]`

Calculates index of a voxel.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

tVolume& mds::img::CVolumeBase< CVolume< T, Allocator > >::getImpl ( ) [inherited]

Returns reference to the volume data implementation.

const tVolume& mds::img::CVolumeBase< CVolume< T, Allocator > >::getImpl ( ) const [inherited]

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::getMargin ( ) const [inherited]

Returns the volume Margin size in voxels.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

static const char* mds::mod::CSerializable::getName ( ) [static, inherited]

Default class name.

template<typename T , template< typename > class A>

bool CVolume::getPlaneXY	(	tSize	z,
		CImage< T > &	Plane
	)		`[inherited]`

Cuts the volume using plane XY and saves obtained data to a given image.

Position of the plane is specified by the z coordinate.

template<typename T , template< typename > class A>

bool CVolume::getPlaneXZ	(	tSize	y,
		CImage< T > &	Plane
	)		`[inherited]`

Cuts the volume using plane XZ and saves obtained data to a given image.

Position of the plane is specified by the y coordinate.

template<typename T , template< typename > class A>

bool CVolume::getPlaneYZ	(	tSize	x,
		CImage< T > &	Plane
	)		`[inherited]`

Cuts the volume using plane YZ and saves obtained data to a given image.

Position of the plane is specified by the x coordinate.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

T* mds::img::CVolume< T, Allocator >::getPtr ( ) [inherited]

Returns pointer to the volume data.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

const T* mds::img::CVolume< T, Allocator >::getPtr ( ) const [inherited]

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

T* mds::img::CVolume< T, Allocator >::getPtr	(	tSize	x,
		tSize	y,
		tSize	z
	)		`[inherited]`

Returns pointer to the given voxel.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

const T* mds::img::CVolume< T, Allocator >::getPtr	(	tSize	x,
		tSize	y,
		tSize	z
	)		const `[inherited]`

int mds::base::CObject::getReferencesCount ( ) const [inherited]

Returns the number of references.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

T* mds::img::CVolume< T, Allocator >::getRowPtr	(	tSize	y,
		tSize	z
	)		`[inherited]`

Returns pointer to the first element of the volume row.

x coordinate is taken to be zero.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

const T* mds::img::CVolume< T, Allocator >::getRowPtr	(	tSize	y,
		tSize	z
	)		const `[inherited]`

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CSize3i& mds::img::CVolume< T, Allocator >::getSize ( ) [inherited]

Returns the volume size.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

const CSize3i& mds::img::CVolume< T, Allocator >::getSize ( ) const [inherited]

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

bool mds::img::CDensityVolume::getSlice	(	double	dPosition,
		CSlice &	Plane
	)

Cuts the volume using plane by given slice and saves obtained data to the slice.

Position of the plane is specified by the real position.

bool mds::img::CDensityVolume::getSliceXY	(	tSize	z,
		CSlice &	Plane
	)

Cuts the volume using plane XY and saves obtained data to a given slice.

Position of the plane is specified by the Z index.

bool mds::img::CDensityVolume::getSliceXY	(	double	dZ,
		CSlice &	Plane
	)

Cuts the volume using plane XY and saves obtained data to a given slice.

Position of the plane is specified by the Z real position.

bool mds::img::CDensityVolume::getSliceXZ	(	tSize	y,
		CSlice &	Plane
	)

Cuts the volume using plane XZ and saves obtained data to a given slice.

Position of the plane is specified by the Y index.

bool mds::img::CDensityVolume::getSliceXZ	(	double	dY,
		CSlice &	Plane
	)

Cuts the volume using plane XZ and saves obtained data to a given slice.

Position of the plane is specified by the Y real position.

bool mds::img::CDensityVolume::getSliceYZ	(	tSize	x,
		CSlice &	Plane
	)

Cuts the volume using plane YZ and saves obtained data to a given slice.

Position of the plane is specified by the X index.

bool mds::img::CDensityVolume::getSliceYZ	(	double	dX,
		CSlice &	Plane
	)

Cuts the volume using plane YZ and saves obtained data to a given slice.

Position of the plane is specified by the X real position.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::getXOffset ( ) const [inherited]

Returns offset between two neigbouring voxels in x-axis.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::getXSize ( ) const [inherited]

Returns the volume size (dimensions).

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::getYOffset ( ) const [inherited]

Returns offset between two neigbouring voxels in y-axis.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::getYSize ( ) const [inherited]

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::getZOffset ( ) const [inherited]

Returns offset between two neigbouring voxels in z-axis.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::getZSize ( ) const [inherited]

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::height ( ) const [inherited]

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

void mds::img::CDensityVolume::initSlice	(	CSlice &	Slice,
		EPlane	eOrientation
	)

Initializes slice parameters (size and etc.) with respect to the volume parameters in a given direction.

template<typename T , template< typename > class A>

T CVolume::interpolate ( const CPoint3D & Point ) const [inherited]

Bilinear subvoxel value interpolation.

bool mds::base::CObject::isOnHeap ( ) const [inherited]

Returns true if the object is allocated on the heap.

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::limit	(	const T &	Lower,
		const T &	Upper
	)		`[inherited]`

Limits the range of voxel values.

mds::img::CDensityVolume::MDS_ENTITY_COMPRESSION ( mds::mod::CC_RAW )

Standard method getEntityCompression().

mds::img::CDensityVolume::MDS_ENTITY_NAME ( "DensityVolume" )

Standard method getEntityName().

mds::img::CDensityVolume::MDS_SHAREDPTR ( CDensityVolume )

Smart pointer type.

Declares type tSmartPtr.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

mds::img::CVolume< T, Allocator >::MDS_SHAREDPTR ( CVolume< T, Allocator > ) [inherited]

Declare smart pointer type tSmartPtr.

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::mirrorMargin ( ) [inherited]

Pads the volume margin using a simple mirroring.

static void* mds::base::CObject::operator new ( std::size_t Size ) [static, inherited]

Allocates a new object on the heap.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

T& mds::img::CVolume< T, Allocator >::operator()	(	tSize	x,
		tSize	y,
		tSize	z
	)		`[inherited]`

Returns the subscripted voxel [x][y][z].

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

const T& mds::img::CVolume< T, Allocator >::operator()	(	tSize	x,
		tSize	y,
		tSize	z
	)		const `[inherited]`

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

T& mds::img::CVolume< T, Allocator >::operator() ( tSize i ) [inherited]

Returns the subscripted voxel.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

const T& mds::img::CVolume< T, Allocator >::operator() ( tSize i ) const [inherited]

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class A>

template<class Derived >

CVolume< T, A > & mds::img::CVolume< T, A >::operator*= ( const CVolumeBase< Derived > & Volume ) [inherited]

Pixel wise product.

template<typename T , template< typename > class A>

template<typename U >

CVolume< T, A > & mds::img::CVolume< T, A >::operator*= ( const CScalar & c ) [inherited]

Multiplies all pixels by scalar.

An operator that allows conversion U -> T must be defined!

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<class Derived >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::operator*= ( const CVolumeBase< Derived > & Volume ) [inherited]

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<typename U >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::operator*= ( const CScalar & c ) [inherited]

template<typename T , template< typename > class A>

template<class Derived >

CVolume< T, A > & mds::img::CVolume< T, A >::operator+= ( const CVolumeBase< Derived > & Volume ) [inherited]

Pixel wise addition.

template<typename T , template< typename > class A>

template<typename U >

CVolume< T, A > & mds::img::CVolume< T, A >::operator+= ( const CScalar & c ) [inherited]

Adds scalar to all pixels.

An operator that allows conversion from U to T must be defined!

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<class Derived >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::operator+= ( const CVolumeBase< Derived > & Volume ) [inherited]

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<typename U >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::operator+= ( const CScalar & c ) [inherited]

template<typename T , template< typename > class A>

template<class Derived >

CVolume< T, A > & mds::img::CVolume< T, A >::operator-= ( const CVolumeBase< Derived > & Volume ) [inherited]

Pixel wise subtraction.

template<typename T , template< typename > class A>

template<typename U >

CVolume< T, A > & mds::img::CVolume< T, A >::operator-= ( const CScalar & c ) [inherited]

Subtracts scalar from all pixels.

An operator that allows conversion U -> T must be defined!

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<class Derived >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::operator-= ( const CVolumeBase< Derived > & Volume ) [inherited]

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<typename U >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::operator-= ( const CScalar & c ) [inherited]

template<typename T , template< typename > class A>

template<class Derived >

CVolume< T, A > & mds::img::CVolume< T, A >::operator/= ( const CVolumeBase< Derived > & Volume ) [inherited]

Pixel wise division.

template<typename T , template< typename > class A>

template<typename U >

CVolume< T, A > & mds::img::CVolume< T, A >::operator/= ( const CScalar & c ) [inherited]

Divides all pixels by scalar.

An operator that allows conversion U -> T must be defined!

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<class Derived >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::operator/= ( const CVolumeBase< Derived > & Volume ) [inherited]

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<typename U >

CVolume<T,A>& mds::img::CVolume< T, Allocator >::operator/= ( const CScalar & c ) [inherited]

CDensityVolume & mds::img::CDensityVolume::operator= ( const CDensityVolume & Volume )

Volume assignment operator.

template<typename T , template< typename > class A>

template<class Function >

Function mds::img::CVolume< T, A >::pforEach ( Function Func ) [inherited]

Calls a function object for every voxel.

Parallel version.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class A>

template<class Function >

Function mds::img::CVolume< T, A >::pforEach ( Function Func ) const [inherited]

Calls a function object for every voxel.

Parallel version.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<class Function >

Function mds::img::CVolume< T, Allocator >::pforEach ( Function Func ) [inherited]

Calls a function object for every voxel.

Parallel version.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

template<class Function >

Function mds::img::CVolume< T, Allocator >::pforEach ( Function Func ) const [inherited]

Calls a function object for every voxel.

Parallel version.

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

template<typename T , template< typename > class A>

CVolume< T, A >::tRect CVolume::rect	(	const CPoint3i &	Position,
		const CSize3i &	Size
	)		`[inherited]`

Returns a specified sub-volume (i.e. rectangular box).

template<typename T , template< typename > class A>

const CVolume< T, A >::tRect mds::img::CVolume< T, A >::rect	(	const CPoint3i &	Position,
		const CSize3i &	Size
	)		const `[inherited]`

template<typename T , template< typename > class A>

CVolume< T, A >::tRect CVolume::rect	(	const CRange &	XRange,
		const CRange &	YRange,
		const CRange &	ZRange
	)		`[inherited]`

Returns a specified sub-volume (i.e. rectangular box).

template<typename T , template< typename > class A>

const CVolume< T, A >::tRect mds::img::CVolume< T, A >::rect	(	const CRange &	XRange,
		const CRange &	YRange,
		const CRange &	ZRange
	)		const `[inherited]`

template<typename T , template< typename > class A>

CVolume< T, A > & CVolume::replace	(	const T &	Value,
		const T &	NewValue
	)		`[inherited]`

Replaces all voxels of a given value by a specified value.

template<typename T , template< typename > class A>

CVolume< T, A >::tRow CVolume::row	(	tSize	y,
		tSize	z
	)		`[inherited]`

Returns a specified row.

template<typename T , template< typename > class A>

const CVolume< T, A >::tRow mds::img::CVolume< T, A >::row	(	tSize	y,
		tSize	z
	)		const `[inherited]`

template<class S >

void mds::img::CDensityVolume::serialize ( mds::mod::CChannelSerializer< S > & Writer )

Serializes all class members.

Reimplemented from mds::img::CVolume< T, Allocator >.

template<class S >

void mds::img::CDensityVolume::serialize ( mds::mod::CChannelSerializer< S > & Writer )

Serializes all class members.

Reimplemented from mds::img::CVolume< T, Allocator >.

tVolume& mds::img::CVolumeBase< CVolume< T, Allocator > >::set	(	tSize	x,
		tSize	y,
		tSize	z,
		const tVoxel &	Value
	)		`[inherited]`

Sets the voxel at the position [x][y][z].

tVolume& mds::img::CVolumeBase< CVolume< T, Allocator > >::set	(	tSize	i,
		const tVoxel &	Value
	)		`[inherited]`

Sets the subscripted voxel.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CVolume& mds::img::CVolume< T, Allocator >::set	(	tSize	x,
		tSize	y,
		tSize	z,
		const T &	Value
	)		`[inherited]`

Sets the voxel at the position [x][y][z].

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CVolume& mds::img::CVolume< T, Allocator >::set	(	tSize	i,
		const T &	Value
	)		`[inherited]`

Sets the subscripted voxel.

CDensityVolume& mds::img::CDensityVolume::setDX ( double dValue )

Set the real voxel size in x-axis.

CDensityVolume& mds::img::CDensityVolume::setDY ( double dValue )

Set the real voxel size in y-axis.

CDensityVolume& mds::img::CDensityVolume::setDZ ( double dValue )

Set the real voxel size in z-axis.

template<typename T , template< typename > class A>

bool CVolume::setPlaneXY	(	tSize	z,
		const CImage< T > &	Plane
	)		`[inherited]`

Projects a given image data to the volume using a specified plane.

template<typename T , template< typename > class A>

bool CVolume::setPlaneXZ	(	tSize	y,
		const CImage< T > &	Plane
	)		`[inherited]`

Projects a given image data to the volume using a specified plane.

template<typename T , template< typename > class A>

bool CVolume::setPlaneYZ	(	tSize	x,
		const CImage< T > &	Plane
	)		`[inherited]`

Projects a given image data to the volume using a specified plane.

CDensityVolume& mds::img::CDensityVolume::setVoxel	(	double	dDX,
		double	dDY,
		double	dDZ
	)

Sets voxel dimensions.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CVolume< T, A > & CVolume::subSample	(	const CVolume< T, Allocator > &	Volume,
		tSize	l = `2`,
		tSize	m = `2`,
		tSize	n = `2`
	)		`[inherited]`

Subsample the volume.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::width ( ) const [inherited]

Returns the volume size (dimensions).

Reimplemented from mds::img::CVolumeBase< CVolume< T, Allocator > >.

Member Data Documentation

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tDataStorage mds::img::CVolume< T, Allocator >::m_DataStorage [protected, inherited]

Volume data storage.

double mds::img::CDensityVolume::m_dDX [protected]

Real voxel size.

double mds::img::CDensityVolume::m_dDY [protected]

double mds::img::CDensityVolume::m_dDZ [protected]

int mds::base::CObject::m_iHeapObject [mutable, protected, inherited]

Flag initialized if the object is on the heap.

int mds::base::CObject::m_iReferences [mutable, protected, inherited]

The number of references to the object.

Zero if there is no reference.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::m_Margin [protected, inherited]

Volume margin size.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

CSize3i mds::img::CVolume< T, Allocator >::m_Size [protected, inherited]

Volume dimensions.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::m_YOffset [protected, inherited]

Offsets used by subscripting functions.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::m_ZeroOffset [protected, inherited]

Offset of the first voxel (0,0,0) from the beginning of data.

template<typename T , template< typename > class Allocator = mds::base::CPartedData>

tSize mds::img::CVolume< T, Allocator >::m_ZOffset [protected, inherited]

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation